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1

The enhancement of histone H4 and H2A serine 1 phosphorylation during mitosis and S-phase is evolutionarily conserved

Cynthia M. Barber, Fiona B. Turner, Yanming Wang, Kirsten Hagstrom, Sean D. Taverna, Sahana Mollah, Beatrix Ueberheide, Barbara J. Meyer, Donald F. Hunt, Peter Cheung, C. David Allis

Journal:

Year:

2004

Language:

english

File:

PDF, 577 KB

english, 2004

2

Chemical derivatization of histones for facilitated analysis by mass spectrometry

Garcia, Benjamin A, Mollah, Sahana, Ueberheide, Beatrix M, Busby, Scott A, Muratore, Tara L, Shabanowitz, Jeffrey, Hunt, Donald F

Journal:

Nature Protocols

Year:

2007

Language:

english

File:

PDF, 192 KB

english, 2007

3

Novel Linear Quadrupole Ion Trap/FT Mass Spectrometer: Performance Characterization and Use in the Comparative Analysis of Histone H3 Post-translational Modifications

Syka, John E. P., Marto, Jarrod A., Bai, Dina L., Horning, Stevan, Senko, Michael W., Schwartz, Jae C., Ueberheide, Beatrix, Garcia, Benjamin, Busby, Scott, Muratore, Tara, Shabanowitz, Jeffrey, Hunt,

Journal:

Journal of Proteome Research

Year:

2004

Language:

english

File:

PDF, 138 KB

english, 2004

4

This week 50 years ago

Bao, Y., Waldemarson, S., Zhang, G., Wahlander, A., Ueberheide, B., Myung, S., Reed, B., Molloy, K., Padovan, J.C., Eriksson, J., Neubert, T.A., Chait, B.T., Fenyö, D.

Journal:

Year:

2007

Language:

english

File:

PDF, 310 KB

english, 2007

5

Venom peptides as therapeutics: advances, challenges and the future of venom-peptide discovery

Robinson, Samuel D, Undheim, Eivind AB, Ueberheide, Beatrix, King, Glenn F

Journal:

Expert Review of Proteomics

Year:

2017

Language:

english

File:

PDF, 1.17 MB

english, 2017

6

Exosomes shuttle TREX1-sensitive IFN-stimulatory dsDNA from irradiated cancer cells to dendritic cells

Diamond, Julie M., Vanpouille-Box, Claire, Spada, Sheila, Rudqvist, Nils-Petter, Chapman, Jessica, Ueberheide, Beatrix, Pilones, Karsten A., Sarfraz, Yasmeen, Formenti, Silvia C., Demaria, Sandra

Journal:

Cancer Immunology Research

Year:

2018

Language:

english

File:

PDF, 9.08 MB

english, 2018

7

[IEEE 2019 IEEE Conference on Virtual Reality and 3D User Interfaces (VR) - Osaka, Japan (2019.3.23-2019.3.27)] 2019 IEEE Conference on Virtual Reality and 3D User Interfaces (VR) - Gaze and Motion-aware Real-Time Dome Projection System

Grogorick, Steve, Ueberheide, Matthias, Tauscher, Jan-Philipp, Bittner, Paul Maximilian, Magnor, Marcus

Year:

2019

Language:

english

File:

PDF, 5.56 MB

english, 2019

8

The utility of ETD mass spectrometry in proteomic analysis

Leann M. Mikesh, Beatrix Ueberheide, An Chi, Joshua J. Coon, John E.P. Syka, Jeffrey Shabanowitz, Donald F. Hunt

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2006

Language:

english

File:

PDF, 1015 KB

english, 2006

9

Deciphering the histone code using mass spectrometry

Beatrix M. Ueberheide, Sahana Mollah

Journal:

International Journal of Mass Spectrometry

Year:

2007

Language:

english

File:

PDF, 275 KB

english, 2007

10

Regulation of HP1–chromatin binding by histone H3 methylation and phosphorylation

Fischle, Wolfgang, Tseng, Boo Shan, Dormann, Holger L., Ueberheide, Beatrix M., Garcia, Benjamin A., Shabanowitz, Jeffrey, Hunt, Donald F., Funabiki, Hironori, Allis, C. David

Journal:

Year:

2005

Language:

english

File:

PDF, 878 KB

english, 2005

11

Constrained De Novo Sequencing of Conotoxins

Bhatia, Swapnil, Kil, Yong J., Ueberheide, Beatrix, Chait, Brian T., Tayo, Lemmuel, Cruz, Lourdes, Lu, Bingwen, Yates, John R., Bern, Marshall

Journal:

Journal of Proteome Research

Year:

2012

Language:

english

File:

PDF, 1.50 MB

english, 2012

12

Strategy for Identifying Dendritic Cell-Processed CD4+ T Cell Epitopes from the HIV Gag p24 Protein

Bozzacco, Leonia, Yu, Haiqiang, Dengjel, Jörn, Trumpfheller, Christine, Zebroski, Henry A., Zhang, Nawei, Küttner, Victoria, Ueberheide, Beatrix M., Deng, Haiteng, Chait, Brian T., Steinman, Ralph M.,

Journal:

Year:

2012

Language:

english

File:

PDF, 1.42 MB

english, 2012

13

Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions

Alexander J. Ruthenburg, Haitao Li, Thomas A. Milne, Scott Dewell, Robert K. McGinty, Melanie Yuen, Beatrix Ueberheide, Yali Dou, Tom W. Muir, Dinshaw J. Patel, C. David Allis

Journal:

Year:

2011

Language:

english

File:

PDF, 1.95 MB

english, 2011

14

Histone Methyltransferases Direct Different Degrees of Methylation to Define Distinct Chromatin Domains

Judd C. Rice, Scott D. Briggs, Beatrix Ueberheide, Cynthia M. Barber, Jeffrey Shabanowitz, Donald F. Hunt, Yoichi Shinkai, C.David Allis

Journal:

Year:

2003

Language:

english

File:

PDF, 425 KB

english, 2003

15

Sequence and Structural Convergence of Broad and Potent HIV Antibodies That Mimic CD4 Binding

Scheid, J. F., Mouquet, H., Ueberheide, B., Diskin, R., Klein, F., Oliveira, T. Y. K., Pietzsch, J., Fenyo, D., Abadir, A., Velinzon, K., Hurley, A., Myung, S., Boulad, F., Poignard, P., Burton, D. R.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.71 MB

english, 2011

16

UvrD facilitates DNA repair by pulling RNA polymerase backwards

Epshtein, Vitaly, Kamarthapu, Venu, McGary, Katelyn, Svetlov, Vladimir, Ueberheide, Beatrix, Proshkin, Sergey, Mironov, Alexander, Nudler, Evgeny

Journal:

Year:

2014

Language:

english

File:

PDF, 7.28 MB

english, 2014

17

Atypical and classical memory B cells produce Plasmodium falciparum neutralizing antibodies

Muellenbeck, M. F., Ueberheide, B., Amulic, B., Epp, A., Fenyo, D., Busse, C. E., Esen, M., Theisen, M., Mordmuller, B., Wardemann, H.

Journal:

Journal of Experimental Medicine

Year:

2013

Language:

english

File:

PDF, 3.50 MB

english, 2013

18

Detection and correction of interference in SRM analysis

Bao, Y., Waldemarson, S., Zhang, G., Wahlander, A., Ueberheide, B., Myung, S., Reed, B., Molloy, K., Padovan, J.C., Eriksson, J., Neubert, T.A., Chait, B.T., Fenyö, D.

Journal:

Year:

2013

Language:

english

File:

PDF, 529 KB

english, 2013

19

SUCCESSFUL TREATMENT OF UNUNITED FRACTURE BY SETON.

Bao, Y., Waldemarson, S., Zhang, G., Wahlander, A., Ueberheide, B., Myung, S., Reed, B., Molloy, K., Padovan, J.C., Eriksson, J., Neubert, T.A., Chait, B.T., Fenyö, D.

Journal:

Year:

1829

Language:

english

File:

PDF, 211 KB

english, 1829

20

DUB-Resistant Ubiquitin to Survey Ubiquitination Switches in Mammalian Cells

Békés, Miklós, Okamoto, Keiji, Crist, Sarah B., Jones, Mathew J., Chapman, Jessica R., Brasher, Bradley B., Melandri, Francesco D., Ueberheide, Beatrix M., Lazzerini Denchi, Eros, Huang, Tony T.

Journal:

Year:

2013

Language:

english

File:

PDF, 3.42 MB

english, 2013

21

Deubiquitinases as a Signaling Target of Oxidative Stress

Cotto-Rios, Xiomaris M., Békés, Miklós, Chapman, Jessica, Ueberheide, Beatrix, Huang, Tony T.

Journal:

Year:

2012

Language:

english

File:

PDF, 1021 KB

english, 2012

22

Rapid sensitive analysis of cysteine rich peptide venom components

Ueberheide, B. M., Fenyo, D., Alewood, P. F., Chait, B. T.

Journal:

Proceedings of the National Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 624 KB

english, 2009

23

Protein identification using sequential ion/ion reactions and tandem mass spectrometry

Coon, J. J., Ueberheide, B., Syka, J. E. P., Dryhurst, D. D., Ausio, J., Shabanowitz, J., Hunt, D. F.

Journal:

Proceedings of the National Academy of Sciences

Year:

2005

Language:

english

File:

PDF, 451 KB

english, 2005

24

Specialized insulin is used for chemical warfare by fish-hunting cone snails

Safavi-Hemami, Helena, Gajewiak, Joanna, Karanth, Santhosh, Robinson, Samuel D., Ueberheide, Beatrix, Douglass, Adam D., Schlegel, Amnon, Imperial, Julita S., Watkins, Maren, Bandyopadhyay, Pradip K.,

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 978 KB

english, 2015

25

Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini

Taverna, S. D., Ueberheide, B. M., Liu, Y., Tackett, A. J., Diaz, R. L., Shabanowitz, J., Chait, B. T., Hunt, D. F., Allis, C. D.

Journal:

Proceedings of the National Academy of Sciences

Year:

2007

Language:

english

File:

PDF, 1.49 MB

english, 2007

26

Proteome-wide prediction of acetylation substrates

Basu, A., Rose, K. L., Zhang, J., Beavis, R. C., Ueberheide, B., Garcia, B. A., Chait, B., Zhao, Y., Hunt, D. F., Segal, E., Allis, C. D., Hake, S. B.

Journal:

Proceedings of the National Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 517 KB

english, 2009

27

A disulfide tether stabilizes the block of sodium channels by the conotoxin O -GVIIJ

Gajewiak, J., Azam, L., Imperial, J., Walewska, A., Green, B. R., Bandyopadhyay, P. K., Raghuraman, S., Ueberheide, B., Bern, M., Zhou, H. M., Minassian, N. A., Hagan, R. H., Flinspach, M., Liu, Y., B

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.03 MB

english, 2014

28

The Yeast Snt2 Protein Coordinates the Transcriptional Response to Hydrogen Peroxide-Mediated Oxidative Stress

Baker, L. A., Ueberheide, B. M., Dewell, S., Chait, B. T., Zheng, D., Allis, C. D.

Journal:

Molecular and Cellular Biology

Year:

2013

Language:

english

File:

PDF, 2.14 MB

english, 2013

29

Insights into the origins of fish hunting in venomous cone snails from studies of Conus tessulatus

Aman, Joseph W., Imperial, Julita S., Ueberheide, Beatrix, Zhang, Min-Min, Aguilar, Manuel, Taylor, Dylan, Watkins, Maren, Yoshikami, Doju, Showers-Corneli, Patrice, Safavi-Hemami, Helena, Biggs, Jaso

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.14 MB

english, 2015

30

Proteomics

Garcia, Benjamin A., Cooper, Helen J., Dorrestein, Pieter C., Tang, Kai, Ueberheide, Beatrix M.

Journal:

Journal of Biomedicine and Biotechnology

Year:

2010

Language:

english

File:

PDF, 40 KB

english, 2010

31

Identification of hyaluronidase and phospholipase B in Lachesis muta rhombeata venom

G. A. Wiezel, P. K. Dos Santos, F. A. Cordeiro, K. C. Bordon, H. S. Selistre-de-araújo, B. Ueberheide, E. C. Arantes

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

32

Analysis of the Histone H3.1 Interactome: A Suitable Chaperone for the Right Event

Campos, Eric I., Smits, Arne H., Kang, Young-Hoon, Landry, Sébastien, Escobar, Thelma M., Nayak, Shruti, Ueberheide, Beatrix M., Durocher, Daniel, Vermeulen, Michiel, Hurwitz, Jerard, Reinberg, Danny

Journal:

Year:

2015

Language:

english

File:

PDF, 2.50 MB

english, 2015

33

De novo sequencing and resurrection of a human astrovirus-neutralizing antibody

Bogdanoff, Walter A., Morgenstern, David, Bern, Marshall, Ueberheide, Beatrix M., Sanchez-Fauquier, Alicia, DuBois, Rebecca M.

Journal:

ACS Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 2.02 MB

english, 2016

34

PROTEOMIC ANALYSIS OF ARCHIVED ALZHEIMER'S DISEASE BRAIN TISSUE USING LASER CAPTURE MICRODISSECTION AND LC-MS

Drummond, Eleanor, Ueberheide, Beatrix, Wisniewski, Thomas

Journal:

Alzheimer's & Dementia

Year:

2014

Language:

english

File:

PDF, 71 KB

english, 2014

35

TIMELESS Forms a Complex with PARP1 Distinct from Its Complex with TIPIN and Plays a Role in the DNA Damage Response

Young, Lauren M., Marzio, Antonio, Perez-Duran, Pablo, Reid, Dylan A., Meredith, Daniel N., Roberti, Domenico, Star, Ayelet, Rothenberg, Eli, Ueberheide, Beatrix, Pagano, Michele

Journal:

Year:

2015

Language:

english

File:

PDF, 2.45 MB

english, 2015

36

Staphylococcus aureus Coordinates Leukocidin Expression and Pathogenesis by Sensing Metabolic Fluxes via RpiRc

Balasubramanian, Divya, Ohneck, Elizabeth A., Chapman, Jessica, Weiss, Andy, Kim, Min Kyung, Reyes-Robles, Tamara, Zhong, Judy, Shaw, Lindsey N., Lun, Desmond S., Ueberheide, Beatrix, Shopsin, Bo, Tor

Journal:

Year:

2016

Language:

english

File:

PDF, 2.91 MB

english, 2016

37

Tumor-Derived Exosomes as Modulators of Radiation-Induced Anti-Tumor Immunity

Diamond, J., Chapman, J., Ueberheide, B., Formenti, S., Demaria, S.

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2016

Language:

english

File:

PDF, 52 KB

english, 2016

38

Cyclin F-Mediated Degradation of SLBP Limits H2A.X Accumulation and Apoptosis upon Genotoxic Stress in G2

Dankert, John F., Rona, Gergely, Clijsters, Linda, Geter, Phillip, Skaar, Jeffrey R., Bermudez-Hernandez, Keria, Sassani, Elizabeth, Fenyö, David, Ueberheide, Beatrix, Schneider, Robert, Pagano, Miche

Journal:

Year:

2016

Language:

english

File:

PDF, 3.11 MB

english, 2016

39

Proteomic analysis of neurons microdissected from formalin-fixed, paraffin-embedded Alzheimer’s disease brain tissue

Drummond, Eleanor S, Nayak, Shruti, Ueberheide, Beatrix, Wisniewski, Thomas

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 377 KB

english, 2015

40

ALTERED PROTEIN EXPRESSION IN AMYLOID PLAQUES IN RAPIDLY PROGRESSIVE ALZHEIMER’S DISEASE

Drummond, Eleanor, Nayak, Shruti, Faustin, Arline, Pires, Geoffrey, Hickman, Richard, Safar, Jiri, Askenazi, Manor, Cohen, Mark, Haldiman, Tracy, Kim, Chae, Ueberheide, Beatrix, Wisniewski, Thomas

Journal:

Alzheimer's & Dementia

Year:

2016

Language:

english

File:

PDF, 71 KB

english, 2016

41

Automated Antibody De Novo Sequencing and Its Utility in Biopharmaceutical Discovery

Sen, K. Ilker, Tang, Wilfred H, Nayak, Shruti, Kil, Yong J, Bern, Marshall, Ozoglu, Berk, Ueberheide, Beatrix, Davis, Darryl, Becker, Christopher

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2017

Language:

english

File:

PDF, 1.27 MB

english, 2017

42

Using Quantitative Spectrometry to Understand the Influence of Genetics and Nutritional Perturbations On the Virulence Potential of Staphylococcus aureus

Chapman, Jessica R., Balasubramanian, Divya, Tam, Kayan, Askenazi, Manor, Copin, Richard, Shopsin, Bo, Torres, Victor J., Ueberheide, Beatrix M.

Journal:

Molecular & Cellular Proteomics

Year:

2017

Language:

english

File:

PDF, 2.41 MB

english, 2017

43

Ionizing radiation modifies immune-related molecular profiles of tumor-derived exosomes

Diamond, Julie M, Chapman, Jessica R, Ueberheide, Beatrix, Formenti, Silvia, Demaria, Sandra

Journal:

Journal for ImmunoTherapy of Cancer

Year:

2015

Language:

english

File:

PDF, 213 KB

english, 2015

44

Phosphoproteomics of FGF1 signaling in chondrocytes: Identifying the signature of inhibitory response.

Chapman, Jessica R., Katsara, Olga, Ruoff, Rachel, Morgenstern, David, Nayak, Shruti, Basilico, Claudio, Ueberheide, Beatrix, Kolupaeva, Victoria

Journal:

Molecular & Cellular Proteomics

Year:

2017

Language:

english

File:

PDF, 1.20 MB

english, 2017

45

Preparation and evaluation of human choroid extracellular matrix scaffolds for the study of cell replacement strategies

Chirco, Kathleen R., Worthington, Kristan S., Flamme-Wiese, Miles J., Riker, Megan J., Andrade, Joshua D., Ueberheide, Beatrix M., Stone, Edwin M., Tucker, Budd A., Mullins, Robert F.

Journal:

Acta Biomaterialia

Year:

2017

Language:

english

File:

PDF, 17.54 MB

english, 2017

46

Degradation of PHLPP2 by KCTD17, via a Glucagon-dependent Pathway, Promotes Hepatic Steatosis

Kim, KyeongJin, Ryu, Dongryeol, Dongiovanni, Paola, Ozcan, Lale, Nayak, Shruti, Ueberheide, Beatrix, Valenti, Luca, Auwerx, Johan, Pajvani, Utpal B.

Journal:

Gastroenterology

Year:

2017

Language:

english

File:

PDF, 5.67 MB

english, 2017

47

STING Senses Microbial Viability to Orchestrate Stress-Mediated Autophagy of the Endoplasmic Reticulum

Moretti, Julien, Roy, Soumit, Bozec, Dominique, Martinez, Jennifer, Chapman, Jessica R., Ueberheide, Beatrix, Lamming, Dudley W., Chen, Zhijian J., Horng, Tiffany, Yeretssian, Garabet, Green, Douglas

Journal:

Year:

2017

Language:

english

File:

PDF, 6.92 MB

english, 2017

48

Quantitative and structural assessment of histone methyllysine analog engagement by cognate binding proteins reveals affinity decrements relative to native counterparts

Chen, Zhonglei, Notti, Ryan Q, Ueberheide, Beatrix M., Ruthenburg, Alexander Jackson

Journal:

Year:

2017

Language:

english

File:

PDF, 789 KB

english, 2017

49

The GCN2-ATF4 Signaling Pathway Induces 4E-BP to Bias Translation and Boost Antimicrobial Peptide Synthesis in Response to Bacterial Infection

Vasudevan, Deepika, Clark, Nicholas K., Sam, Jessica, Cotham, Victoria C., Ueberheide, Beatrix, Marr, Michael T., Ryoo, Hyung Don

Journal:

Year:

2017

Language:

english

File:

PDF, 2.12 MB

english, 2017

50

Whole proteome analysis of human tankyrase knockout cells reveals targets of tankyrase-mediated degradation

Bhardwaj, Amit, Yang, Yanling, Ueberheide, Beatrix, Smith, Susan

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 2.40 MB

english, 2017

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